STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE24350.1KEGG: pat:Patl_0992 hypothetical protein. (77 aa)    
Predicted Functional Partners:
AEE21481.1
PFAM: methyltransferase small; KEGG: pat:Patl_0447 rRNA (guanine-N(2)-)-methyltransferase.
  
     0.574
AEE24349.1
KEGG: pat:Patl_0993 Sel1 repeat-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein.
 
     0.573
AEE21875.1
KEGG: pat:Patl_3440 hypothetical protein.
  
     0.537
AEE22123.1
KEGG: pat:Patl_3170 prepilin-type cleavage/methylation.
  
     0.513
AEE23856.1
KEGG: pat:Patl_2843 hypothetical protein.
  
     0.497
AEE22369.1
PFAM: protein of unknown function DUF1289; KEGG: cps:CPS_0317 hypothetical protein.
  
     0.455
AEE21849.1
KEGG: pat:Patl_3479 protein serine/threonine phosphatases; PFAM: Serine/threonine-protein kinase-like domain; Stage II sporulation protein E; SMART: serine/threonine protein kinase; protein phosphatase 2C domain protein; Tyrosine-protein kinase, catalytic domain.
  
     0.403
Your Current Organism:
Glaciecola sp. 4H37YE5
NCBI taxonomy Id: 983545
Other names: G. sp. 4H-3-7+YE-5, Glaciecola sp. 4H-3-7+YE-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.