STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM23E3 ubiquitin-protein ligase TRIM23. (574 aa)    
Predicted Functional Partners:
RPS27A
Ubiquitin-40S ribosomal protein S27a.
   
 0.969
ITSN2
Intersectin-2.
    
 0.863
ENSCDRP00005009567
Ubiquitin-large subunit ribosomal protein L40e.
   
 0.797
ENSCDRP00005010777
annotation not available
   
 0.797
UBA52
Ubiquitin; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11- [...]
   
 0.797
ENSCDRP00005023654
annotation not available
   
 0.797
ITSN1
Intersectin-1.
    
 0.790
TRIM44
Tripartite motif-containing protein 44.
   
 0.723
RAD23A
UV excision repair protein RAD23-like protein A.
   
 0.712
NME8
Thioredoxin domain-containing protein 3.
   
 0.709
Your Current Organism:
Camelus dromedarius
NCBI taxonomy Id: 9838
Other names: Arabian camel, C. dromedarius, camel, dromedaries, dromedary, dromedary camel, one-humped camel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.