STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM71E3 ubiquitin-protein ligase TRIM71. (865 aa)    
Predicted Functional Partners:
RNF181
E3 ubiquitin-protein ligase RNF181.
     
 0.734
SMARCC1
SWI/SNF complex subunit SMARCC1.
   
 
 0.640
CAPN3
Calpain-3.
     
 0.569
LIN28A
Protein lin-28-like protein A.
   
 
 0.544
IGSF3
Immunoglobulin superfamily member 3 isoform X1.
    
 0.528
SHOC1
Protein shortage in chiasmata 1 ortholog.
      
 0.513
UBR7
Putative E3 ubiquitin-protein ligase UBR7.
      
 0.504
TRIM58
E3 ubiquitin-protein ligase TRIM58.
      
 0.504
ESRP2
Epithelial splicing regulatory protein 2.
     
 0.487
LIN28B
Protein lin-28 homolog B.
   
 
 0.474
Your Current Organism:
Camelus dromedarius
NCBI taxonomy Id: 9838
Other names: Arabian camel, C. dromedarius, camel, dromedaries, dromedary, dromedary camel, one-humped camel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.