STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP28Ubiquitin carboxyl-terminal hydrolase 28. (1143 aa)    
Predicted Functional Partners:
CLSPN
Claspin.
    
 0.887
UBB
Polyubiquitin-B.
   
 0.820
RPS27A
Ubiquitin-40S ribosomal protein S27a.
   
 0.806
ENSCDRP00005032869
annotation not available
   
 0.739
MYC
Myc proto-oncogene protein.
    
 0.724
TP53BP1
TP53-binding protein 1.
   
 
 0.723
USP5
Ubiquitin carboxyl-terminal hydrolase 5.
   
 
 0.697
UBA52
Ubiquitin; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11- [...]
    
 0.692
ENSCDRP00005023654
annotation not available
    
 0.692
USP13
Ubiquitin carboxyl-terminal hydrolase 13.
   
 
 0.674
Your Current Organism:
Camelus dromedarius
NCBI taxonomy Id: 9838
Other names: Arabian camel, C. dromedarius, camel, dromedaries, dromedary, dromedary camel, one-humped camel
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