STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RGE_08980Hypothetical protein. (170 aa)    
Predicted Functional Partners:
RGE_08990
Two component transcriptional regulator, LytTR family.
 
     0.626
RGE_09000
Integral membrane sensor signal transduction histidine kinase.
 
     0.593
RGE_31430
Hypothetical protein.
  
     0.521
gspN
Putative general secretion pathway protein N GspN.
  
     0.507
RGE_46740
Transcriptional regulator, LuxR family.
  
     0.464
RGE_35150
Hypothetical protein.
  
     0.440
gspH
Putative general secretion pathway protein H GspH.
  
     0.432
RGE_23600
Glutaredoxin-like protein.
  
     0.425
RGE_23390
Putative TonB-dependent receptor.
  
     0.420
RGE_10030
NAD-dependent epimerase/dehydratase family protein.
  
     0.416
Your Current Organism:
Rubrivivax gelatinosus
NCBI taxonomy Id: 983917
Other names: R. gelatinosus IL144, Rubrivivax gelatinosus IL144, Rubrivivax gelatinosus str. IL144, Rubrivivax gelatinosus strain IL144
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.