STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acsFMagnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase AcsF; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis in aerobic conditions. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13- monomethyl ester (MgPMME) (By similarity); Belongs to the AcsF family. (358 aa)    
Predicted Functional Partners:
bchM
Mg-protoporphyrin IX methyl transferase BchM.
 
 
 0.992
bchB
Light-independent protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
 
 0.978
bchE
Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase BchE.
     
 0.972
bchN
Light-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
 
 0.970
bchG
Geranylgeranyl bacteriochlorophyll synthase BchG.
 
  
 0.965
puhB
Putative photosynthetic complex assembly protein PuhB; Protein synonym:ORF227.
 
    0.961
puhC
Putative photosynthetic complex assembly protein PuhC; Protein synonym:ORF154.
 
    0.960
puhA
H subunit of photosynthetic reaction center PuhA.
 
  
 0.950
bchH
Magnesium-chelatase subunit H BchH.
 
  
 0.947
RGE_33560
Hypothetical membrane protein; Protein synonym:ORF276.
 
  
 0.937
Your Current Organism:
Rubrivivax gelatinosus
NCBI taxonomy Id: 983917
Other names: R. gelatinosus IL144, Rubrivivax gelatinosus IL144, Rubrivivax gelatinosus str. IL144, Rubrivivax gelatinosus strain IL144
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