STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y88_0324Pyrrolo-quinoline quinone. (734 aa)    
Predicted Functional Partners:
Y88_2316
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.988
Y88_2315
Cytochrome b/b6-like protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.987
Y88_0119
Cytochrome c class I.
   
 0.982
Y88_1183
Cytochrome c oxidase, cbb3-type, subunit II.
  
 0.973
Y88_1184
Cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 0.971
Y88_2804
Choline dehydrogenase.
   
 0.968
Y88_1762
Formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.955
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.944
Y88_0270
Hypothetical protein.
 
 0.920
Y88_0550
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
  
 
 0.911
Your Current Organism:
Novosphingobium nitrogenifigens
NCBI taxonomy Id: 983920
Other names: N. nitrogenifigens DSM 19370, Novosphingobium nitrogenifigens DSM 19370, Novosphingobium nitrogenifigens Y88, Novosphingobium nitrogenifigens str. DSM 19370, Novosphingobium nitrogenifigens strain DSM 19370
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