STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_0215CRISPR-associated RAMP Csm3 family protein; COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily). (248 aa)    
Predicted Functional Partners:
SGRA_0214
CRISPR-associated RAMP protein, Csm4 family; COG1567 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
 
 
 0.981
SGRA_0213
CRISPR-associated RAMP protein, Csm5 family; COG1332 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
 
 
 0.978
SGRA_0217
CRISPR-associated protein, Csm1 family; COG1353 Predicted hydrolase of the HD superfamily (permuted catalytic motifs).
 
 
 0.965
SGRA_0216
Csm2 family CRISPR-associated protein; COG1421 Uncharacterized protein predicted to be involved in DNA repair.
  
 
 0.921
SGRA_0450
CRISPR-associated protein, TM1812 family.
 
     0.757
SGRA_0448
CRISPR-associated protein, TM1812 family.
 
     0.751
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.663
SGRA_0456
Hypothetical protein.
 
 
 0.640
SGRA_0212
Hypothetical protein; COG4637 Predicted ATPase.
       0.500
SGRA_2325
Hypothetical protein.
  
     0.407
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.