STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_0439PKD domain protein. (2340 aa)    
Predicted Functional Partners:
SGRA_1303
WD-40 repeat-containing protein; COG1117 ABC-type phosphate transport system, ATPase component.
  
     0.756
SGRA_0721
Hypothetical protein.
  
     0.698
SGRA_0852
FG-GAP repeat protein.
  
     0.687
SGRA_1324
Chitinase II; COG3858 Predicted glycosyl hydrolase.
  
     0.663
SGRA_3968
Hypothetical protein.
  
     0.583
SGRA_0085
Lipoprotein.
  
     0.560
SGRA_0688
COG2849 Uncharacterized protein conserved in bacteria.
  
     0.556
SGRA_3589
Hypothetical protein.
  
     0.543
SGRA_3363
Hypothetical protein.
  
     0.522
SGRA_3992
PKD domain protein; COG3291 FOG: PKD repeat.
  
     0.516
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.