STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_0453CRISPR-associated RAMP protein; COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily). (558 aa)    
Predicted Functional Partners:
SGRA_0456
Hypothetical protein.
 
 
 0.940
SGRA_0451
Hypothetical protein.
 
     0.886
SGRA_0455
COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
 
     0.879
SGRA_0214
CRISPR-associated RAMP protein, Csm4 family; COG1567 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
  
 
 0.789
SGRA_0216
Csm2 family CRISPR-associated protein; COG1421 Uncharacterized protein predicted to be involved in DNA repair.
  
 
 0.780
SGRA_0213
CRISPR-associated RAMP protein, Csm5 family; COG1332 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
  
 
 0.764
SGRA_0448
CRISPR-associated protein, TM1812 family.
 
     0.665
SGRA_0217
CRISPR-associated protein, Csm1 family; COG1353 Predicted hydrolase of the HD superfamily (permuted catalytic motifs).
  
 
 0.592
SGRA_0450
CRISPR-associated protein, TM1812 family.
 
     0.583
SGRA_0454
Hypothetical protein.
       0.495
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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