STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_0485Peptidase C14 caspase catalytic subunit p20; COG4642 Uncharacterized protein conserved in bacteria. (472 aa)    
Predicted Functional Partners:
SGRA_3680
WD-40 repeat-containing protein; COG1672 Predicted ATPase (AAA+ superfamily).
  
     0.473
SGRA_3834
WD40 repeat, subgroup; COG2319 FOG: WD40 repeat.
 
   0.468
SGRA_4204
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
 
     0.453
SGRA_1303
WD-40 repeat-containing protein; COG1117 ABC-type phosphate transport system, ATPase component.
 
   0.442
SGRA_2259
MHC_I C-terminus family protein; COG0666 FOG: Ankyrin repeat.
   
 0.436
SGRA_0775
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
 
     0.428
SGRA_2446
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
 
     0.425
SGRA_3690
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
 
     0.425
SGRA_0958
Ankyrin; COG0666 FOG: Ankyrin repeat.
   
 0.422
scpB
Condensin subunit scpb; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
    0.419
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.