STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_0928Putative membrane protein; COG1512 Beta-propeller domains of methanol dehydrogenase type. (318 aa)    
Predicted Functional Partners:
lemA
LemA family protein; COG0457 FOG: TPR repeat.
 
    0.810
SGRA_4100
COG3762 Predicted membrane protein.
 
     0.779
SGRA_0929
Hypothetical protein.
       0.773
SGRA_0927
Hypothetical protein; COG1512 Beta-propeller domains of methanol dehydrogenase type.
 
    
0.770
SGRA_2187
COG0723 Rieske Fe-S protein.
   
   0.550
coxA
Cytochrome-c oxidase; COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.
    
   0.546
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
   0.546
SGRA_2874
Hypothetical protein.
  
  
 0.532
SGRA_0791
COG4260 Putative virion core protein (lumpy skin disease virus).
  
  
 0.420
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.