STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_1379tonB dependent receptor. (631 aa)    
Predicted Functional Partners:
SGRA_1380
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
 
     0.944
SGRA_0032
Hypothetical protein.
  
     0.749
SGRA_1443
Transcriptional regulator; COG2812 DNA polymerase III, gamma/tau subunits; Belongs to the peptidase S24 family.
  
     0.747
SGRA_2555
Beta-glycosidase-like protein.
  
    0.721
SGRA_2396
anti-FecI sigma factor, FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
  
 
 0.697
SGRA_2235
Hypothetical protein.
  
     0.674
gldJ
Gliding motility protein GldJ.
  
    0.668
clpS
ATP-dependent Clp protease adaptor protein ClpS; Belongs to the ClpS family.
  
     0.610
SGRA_2210
Glycosyltransferase 28 domain protein; COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase.
  
     0.591
SGRA_3015
Membrane protein.
  
   
 0.530
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.