STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ggtCOG0405 Gamma-glutamyltransferase. (560 aa)    
Predicted Functional Partners:
ggt-2
Gamma-glutamyltranspeptidase small chain; COG0405 Gamma-glutamyltransferase.
  
  
 
0.926
gshB
COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase).
  
  
 0.925
SGRA_3935
Peroxiredoxin; COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family.
     
 0.912
pepD
Aminoacyl-histidine dipeptidase; COG2195 Di- and tripeptidases.
     
 0.903
SGRA_1211
Peptidase M1 membrane alanine aminopeptidase; COG0308 Aminopeptidase N.
     
  0.900
pepN
Peptidase M1 membrane alanine aminopeptidase; COG0308 Aminopeptidase N.
     
  0.900
SGRA_4040
Hypothetical protein.
     
  0.900
SGRA_2923
COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.815
glnA
COG3968 Uncharacterized protein related to glutamine synthetase.
    
  0.805
SGRA_3525
COG1012 NAD-dependent aldehyde dehydrogenases.
   
 
 0.804
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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