STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_1919Death-on-curing family protein; COG3654 Prophage maintenance system killer protein. (152 aa)    
Predicted Functional Partners:
SGRA_1917
Transcriptional regulator, XRE family; COG1396 Predicted transcriptional regulators.
       0.779
SGRA_1915
Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
       0.773
SGRA_1916
Hypothetical protein.
       0.773
SGRA_1918
Hypothetical protein.
       0.773
SGRA_1920
Hypothetical protein.
       0.773
trmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.664
lpxD
COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
       0.559
SGRA_1913
Hypothetical protein.
       0.494
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.