STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_1968COG1629 Outer membrane receptor proteins, mostly Fe transport. (970 aa)    
Predicted Functional Partners:
SGRA_1969
Putative lipoprotein.
     0.866
SGRA_3105
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
   0.485
tonB
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
   0.480
SGRA_2396
anti-FecI sigma factor, FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
 
  
 0.473
SGRA_0030
Peptidase S9B dipeptidylpeptidase IV domain protein; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
  
     0.459
SGRA_3289
Peptidase C2 calpain.
    
 
 0.450
SGRA_3811
Peptidase S9B dipeptidylpeptidase IV domain protein; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
  
     0.438
SGRA_2588
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.434
SGRA_2909
Peptidase, M28D family protein; COG2234 Predicted aminopeptidases.
  
     0.409
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.