STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_2057Mammalian cell entry related domain protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component. (355 aa)    
Predicted Functional Partners:
SGRA_2056
Mammalian cell entry related domain protein.
    
 
0.976
SGRA_0723
Hypothetical protein; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 0.967
SGRA_0724
ABC transporter ATP-binding protein; COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
 0.957
comL
Outer membrane assembly lipoprotein YfiO; COG4105 DNA uptake lipoprotein.
  
   
 0.642
SGRA_2058
Hypothetical protein.
 
    0.586
yaeT
Surface antigen variable number repeat protein; COG4775 Outer membrane protein/protective antigen OMA87.
 
    0.571
ppiD
COG0760 Parvulin-like peptidyl-prolyl isomerase.
 
     0.532
SGRA_1897
Hypothetical protein.
  
     0.525
SGRA_2546
DNA-directed RNA polymerase, omega subunit.
  
     0.509
SGRA_2669
Putative organic solvent tolerance protein OstA.
 
   
 0.503
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.