STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_2192Endonuclease/exonuclease/phosphatase family protein; COG3021 Uncharacterized protein conserved in bacteria. (364 aa)    
Predicted Functional Partners:
SGRA_2715
Hypothetical protein.
  
     0.631
SGRA_2472
Hypothetical protein.
  
     0.612
hemD
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.603
SGRA_2291
Hypothetical protein.
  
     0.594
SGRA_3493
Rod shape-determining protein MreD.
  
     0.590
rnpA
Ribonuclease p protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.586
SGRA_3310
COG4232 Thiol:disulfide interchange protein.
  
     0.506
SGRA_1775
Hypothetical protein.
  
    0.485
SGRA_0512
Outer membrane lipoprotein carrier protein LolA.
  
     0.480
djlA
COG1076 DnaJ-domain-containing proteins 1.
  
   
 0.475
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.