STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaJCOG2148 Sugar transferases involved in lipopolysaccharide synthesis. (472 aa)    
Predicted Functional Partners:
SGRA_3988
O-antigen polymerase.
 
  
 0.969
SGRA_2820
Lipid A core--O-antigen ligase.
 
  
 0.966
SGRA_2729
Soluble ligand binding domain protein; COG1596 Periplasmic protein involved in polysaccharide export.
  
  
 0.963
manC
COG0836 Mannose-1-phosphate guanylyltransferase.
  
  
 0.961
gmd
Putative GDP-D-mannose dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.961
SGRA_1930
DegT/DnrJ/EryC1/StrS aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.960
rffA
TDP-4-oxo-6-deoxy-D-glucose transaminase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.958
SGRA_4146
Degt/dnrj/eryc1/strs aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.957
SGRA_0863
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
 0.956
SGRA_3146
B-glycosyltransferase; COG1216 Predicted glycosyltransferases.
  
 0.944
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.