STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_2865Putative lipoprotein. (310 aa)    
Predicted Functional Partners:
SGRA_2864
Morn variant repeat-containing protein; COG2849 Uncharacterized protein conserved in bacteria.
       0.527
SGRA_0369
Lvivd repeat-containing protein.
  
     0.501
SGRA_4174
Cell wall hydrolase/autolysin; COG0860 N-acetylmuramoyl-L-alanine amidase.
  
     0.474
SGRA_0673
Outer membrane chaperone Skp (OmpH); COG2825 Outer membrane protein.
  
     0.448
SGRA_2866
COG1300 Uncharacterized membrane protein.
       0.447
SGRA_2867
Hypothetical protein.
       0.447
SGRA_2868
Hypothetical protein.
       0.447
SGRA_0270
Hypothetical protein.
  
     0.422
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.