STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_2910Uroporphyrin-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase; COG0313 Predicted methyltransferases. (235 aa)    
Predicted Functional Partners:
SGRA_2908
BNR repeat-containing glycosyl hydrolase; COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor.
       0.757
SGRA_2909
Peptidase, M28D family protein; COG2234 Predicted aminopeptidases.
       0.757
dnaA
Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
    0.704
SGRA_2911
Hypothetical protein.
       0.548
SGRA_2279
COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
      0.477
SGRA_0250
Fmu (sun) domain protein; COG0144 tRNA and rRNA cytosine-C5-methylases.
     
 0.446
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.435
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.