STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_3105COG0810 Periplasmic protein TonB, links inner and outer membranes. (246 aa)    
Predicted Functional Partners:
SGRA_3106
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
    
0.698
SGRA_2954
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
   0.671
SGRA_1927
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
   0.649
SGRA_1370
OmpA/MotB domain protein; COG0457 FOG: TPR repeat.
 
 
 
 0.643
SGRA_3744
COG0848 Biopolymer transport protein.
 
 
 0.593
SGRA_3931
TonB-dependent receptor plug; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
   0.548
SGRA_0566
TonB-dependent receptor plug.
  
   0.531
SGRA_0176
Hypothetical protein.
  
   0.524
SGRA_1172
Mota/tolq/exbb proton channel; COG0811 Biopolymer transport proteins.
  
 
 0.515
exbB
COG0811 Biopolymer transport proteins.
  
 
 0.515
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.