STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_3869SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence. (433 aa)    
Predicted Functional Partners:
SGRA_4130
Hypothetical protein.
 
     0.777
SGRA_3870
Hypothetical protein; COG0481 Membrane GTPase LepA.
       0.774
SGRA_2572
SMC domain protein; COG4637 Predicted ATPase.
 
     0.690
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.651
SGRA_0814
ATPase-like protein; COG1106 Predicted ATPases.
  
     0.609
SGRA_3167
Hypothetical protein.
  
     0.604
SGRA_1895
Hypothetical protein.
  
     0.601
SGRA_3411
Hypothetical protein.
  
     0.598
SGRA_3880
Hypothetical protein; COG1106 Predicted ATPases.
 
     0.573
SGRA_3404
ATPase-like protein; COG4637 Predicted ATPase.
 
     0.561
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.