STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_3957Putative AraC family transcriptional regulator; COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain. (299 aa)    
Predicted Functional Partners:
cheA
COG0643 Chemotaxis protein histidine kinase and related kinases.
  
 
 0.923
SGRA_4027
Putative transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.692
pleC1
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
   
 
 0.557
SGRA_0410
Transcriptional regulator, Crp/Fnr family protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
  
     0.554
SGRA_3956
Hypothetical protein.
       0.518
mcp
Methyl-accepting chemotaxis protein; COG2202 FOG: PAS/PAC domain.
   
 
 0.494
degS
Multi-sensor signal transduction histidine kinase; COG2202 FOG: PAS/PAC domain.
   
 
 0.456
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.