STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW32286.1Transcriptional regulator, AraC family with amidase-like domain. (316 aa)    
Predicted Functional Partners:
SDW32419.1
Glycine/D-amino acid oxidase.
 
     0.607
SDW32318.1
DNA-binding transcriptional regulator, GntR family.
 
     0.597
SDW25038.1
Sarcosine oxidase subunit delta.
 
     0.584
SDX76537.1
AraC-type DNA-binding protein.
 
   0.571
SDW32248.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.568
SDW32350.1
4-hydroxy-tetrahydrodipicolinate synthase.
       0.531
SDW32383.1
Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.531
SDW32215.1
Maltose O-acetyltransferase.
       0.507
rpoD
RNA polymerase, sigma 70 subunit, RpoD /RNA polymerase, sigma 38 subunit, RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
   0.503
SDW25071.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
     0.503
Your Current Organism:
Ruegeria halocynthiae
NCBI taxonomy Id: 985054
Other names: CCUG 60744, DSM 27839, KCTC 23463, R. halocynthiae, Ruegeria halocynthiae Kim et al. 2012, Ruegeria sp. MA1-6, strain MA1-6
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