STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AET57205.1Hypothetical protein. (95 aa)    
Predicted Functional Partners:
AET57243.1
ParB domain-containing protein nuclease.
 
   
 0.789
AET57206.1
Hypothetical protein.
       0.553
AET57311.1
Anti-sigma F factor antagonist (stage II sporulation protein AA); COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
   
    0.539
AET59102.1
DNA topoisomerase III; COG0550 Topoisomerase IA.
  
  
 0.523
topA
DNA topoisomerase i; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.523
AET57207.1
Hypothetical protein.
       0.512
AET57208.1
Hypothetical protein.
       0.512
AET57320.1
Cell wall-associated hydrolase (invasion-associated protein); COG3103 SH3 domain protein.
  
  
 0.505
AET60479.1
COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
  
 0.452
AET57420.1
Aminotransferase ycbu; COG0520 Selenocysteine lyase.
  
    0.431
Your Current Organism:
Paenibacillus terrae
NCBI taxonomy Id: 985665
Other names: P. terrae HPL-003, Paenibacillus sp. HPL-003, Paenibacillus terrae HPL-003, Paenibacillus terrae str. HPL-003, Paenibacillus terrae strain HPL-003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.