STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBXJA2T_07538Unannotated protein. (189 aa)    
Predicted Functional Partners:
RBXJA2T_07533
Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily.
  
 0.992
kdsA
Unannotated protein; Belongs to the KdsA family.
  
 0.990
kdsB
Unannotated protein; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
 
  
 0.981
RBXJA2T_07543
Unannotated protein.
  
  
 0.898
RBXJA2T_07548
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.807
lpxA
Unannotated protein; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
   
 0.704
lpxK
Unannotated protein; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
   
 0.702
lpxD
Unannotated protein; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
  
 0.695
RBXJA2T_07528
Unannotated protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
       0.691
lpxC
Unannotated protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
 
   
 0.681
Your Current Organism:
Rubrivivax benzoatilyticus
NCBI taxonomy Id: 987059
Other names: R. benzoatilyticus JA2 = ATCC BAA-35, Rubrivivax benzoatilyticus ATCC BAA-35, Rubrivivax benzoatilyticus ATCC BAA-35 = JA2, Rubrivivax benzoatilyticus JA2, Rubrivivax benzoatilyticus JA2 = ATCC BAA-35
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