STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBXJA2T_12497Unannotated protein; Belongs to the UPF0307 family. (185 aa)    
Predicted Functional Partners:
RBXJA2T_12492
Unannotated protein.
       0.807
RBXJA2T_08048
Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
    
 
 0.696
rpmG
Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.681
RBXJA2T_12502
Unannotated protein.
  
    0.625
rplD
Unannotated protein; Forms part of the polypeptide exit tunnel.
  
 
   0.555
RBXJA2T_07055
Unannotated protein.
  
     0.553
rplC
Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
  
 
   0.526
rplV
Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
  
 
   0.511
RBXJA2T_18553
Unannotated protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
    0.501
rplX
Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
  
 
   0.499
Your Current Organism:
Rubrivivax benzoatilyticus
NCBI taxonomy Id: 987059
Other names: R. benzoatilyticus JA2 = ATCC BAA-35, Rubrivivax benzoatilyticus ATCC BAA-35, Rubrivivax benzoatilyticus ATCC BAA-35 = JA2, Rubrivivax benzoatilyticus JA2, Rubrivivax benzoatilyticus JA2 = ATCC BAA-35
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