STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carBCarbamoyl-phosphate synthase large chain. (1076 aa)    
Predicted Functional Partners:
argG
Argininosuccinate synthase; Slightly shortened 3'-end; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
 
 
 0.999
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
 0.999
argI
Ornithine carbamoyltransferase chain I.
 
 
 0.995
thrA
Bifunctional aspartokinase/homoserine dehydrogenase 1; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.973
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
   
  0.960
hisI
Histidine biosynthesis bifunctional protein HisIE; In the N-terminal section; belongs to the PRA-CH family.
   
 
 0.824
argH
Argininosuccinate lyase.
  
  
 0.807
polA
DNA polymerase I, partial; Shortened 3'-end; Almost-intact 5'-3' exonuclease domain; lacking both 3'-5' exonuclease domain and Klenow fragment, this last one includes the region in charge of polymerase activity.
   
  
 0.707
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
     
 0.706
aroE
Shikimate dehydrogenase (NADP(+)); Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
 
 0.702
Your Current Organism:
Buchnera aphidicola
NCBI taxonomy Id: 98804
Other names: B. aphidicola (Tuberolachnus salignus), Buchnera aphidicola (Tuberolachnus salignus)
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