STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ridA2-iminobutanoate/2-iminopropanoate deaminase. (131 aa)    
Predicted Functional Partners:
pheA
P-protein; Slightly shortened 3'-end.
    
  0.969
pta
Phosphate acetyltransferase, partial; 3'-end; In Escherichia coli, a truncated version of this gene has been produced, observing that only C-terminal domain is needed for the catalytic activity. Also, folding and regulation were preserved in all truncated proteins.
   
  0.958
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
    
  0.949
polA
DNA polymerase I, partial; Shortened 3'-end; Almost-intact 5'-3' exonuclease domain; lacking both 3'-5' exonuclease domain and Klenow fragment, this last one includes the region in charge of polymerase activity.
       0.622
bioH
Pimeloyl-[acyl-carrier protein] methyl ester esterase.
  
 
  0.614
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
    
  0.602
metG
Methionine--tRNA ligase; Shortened 3'-end; By generating mutants with shortened 3'-ends of the E.coli's metG gene, it was established that the first 547 residues was the shortest size able to maintain the polypeptide as a functional and stable structure; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.559
argI
Ornithine carbamoyltransferase chain I.
       0.528
thrA
Bifunctional aspartokinase/homoserine dehydrogenase 1; In the C-terminal section; belongs to the homoserine dehydrogenase family.
       0.501
Your Current Organism:
Buchnera aphidicola
NCBI taxonomy Id: 98804
Other names: B. aphidicola (Tuberolachnus salignus), Buchnera aphidicola (Tuberolachnus salignus)
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