STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
O9G_002318Protein kinase, catalytic domain-containing protein; Belongs to the protein kinase superfamily. (410 aa)    
Predicted Functional Partners:
O9G_003525
Cyclin C/H/T/L domain-containing protein; Belongs to the cyclin family.
    
 0.934
O9G_004635
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.887
O9G_003326
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.881
O9G_003455
Uncharacterized protein.
   
 0.799
O9G_000325
Protein kinase, catalytic domain-containing protein; Belongs to the protein kinase superfamily.
  
 
0.779
O9G_003160
FACT complex subunit Spt16p/Cdc68p domain-containing protein.
    
 0.764
O9G_001958
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.712
O9G_000926
RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.
   
 0.711
O9G_004874
Zinc finger, RING-type domain-containing protein.
     
 0.710
O9G_002561
DNA repair helicase ercc3-like protein.
   
 
 0.709
Your Current Organism:
Rozella allomycis
NCBI taxonomy Id: 988480
Other names: R. allomycis CSF55, Rozella allomycis CSF55
Server load: low (16%) [HD]