STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ76792.1Type VI secretion system protein ImpB. (176 aa)    
Predicted Functional Partners:
SEQ76755.1
Type VI secretion system protein ImpC.
 0.998
SEQ76720.1
Type VI secretion system secreted protein Hcp.
 
 0.995
SER20033.1
Type VI secretion system protein ImpC.
 0.994
SEQ81349.1
Type VI secretion system protein ImpC.
 0.991
SEQ76627.1
Type VI secretion system protein ImpK.
 
  
 0.982
SER20014.1
Type VI secretion system secreted protein Hcp.
 
 0.982
SER19965.1
Type VI secretion system protein ImpK.
 
  
 0.956
SEQ76658.1
Type VI secretion system protein ImpJ.
 
 
 0.953
SEQ76567.1
Type VI secretion system secreted protein VgrG.
 
  
 0.929
SER20197.1
Type VI secretion system protein ImpA.
 
 
 0.927
Your Current Organism:
Rosenbergiella nectarea
NCBI taxonomy Id: 988801
Other names: DSM 24150, Enterobacteriaceae bacterium 10N3, Enterobacteriaceae bacterium 8N4, Enterobacteriaceae bacterium 9N2, LMG 26121, LMG:26121, R. nectarea, Rosenbergiella nectarea Halpern et al. 2013, strain 8N4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.