STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER22588.1Prepilin peptidase dependent protein A. (158 aa)    
Predicted Functional Partners:
SER22611.1
Prepilin peptidase dependent protein B.
 
 0.998
SEQ19964.1
Protein transport protein HofB.
  
 0.976
SEQ19936.1
Protein transport protein HofC.
  
  
 0.933
SEQ19996.1
Prepilin peptidase dependent protein D.
 
 
 0.882
SEQ60226.1
Competence protein ComEC.
 
  
 0.826
SEQ74126.1
Competence protein ComEA.
 
  
 0.777
SER26852.1
Type IV leader peptidase family protein.
  
  
 0.770
SER23743.1
Protein of unknown function.
  
     0.763
SEQ90250.1
Protein of unknown function.
  
     0.760
SEQ49557.1
Invasin beta-domain of outer membrane.
 
   
 0.755
Your Current Organism:
Rosenbergiella nectarea
NCBI taxonomy Id: 988801
Other names: DSM 24150, Enterobacteriaceae bacterium 10N3, Enterobacteriaceae bacterium 8N4, Enterobacteriaceae bacterium 9N2, LMG 26121, LMG:26121, R. nectarea, Rosenbergiella nectarea Halpern et al. 2013, strain 8N4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.