STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKO95585.1Dehydrogenase with variable specificity; Related to short-chain alcohol dehydrogenases. (258 aa)    
Predicted Functional Partners:
AKO95583.1
Hypothetical protein.
 
    0.882
AKO95582.1
Periplasmic serine protease (ClpP class).
  
    0.851
AKO95584.1
K+-dependent Na+/Ca+ exchanger related protein-protein.
  
  
 0.849
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.647
AKO95580.1
ABC-type multidrug transport system, ATPase component.
  
 0.555
AKO96446.1
2-polyprenylphenol hydroxylase; And related flavodoxin oxidoreductases.
  
 0.552
AKO98245.1
Short-chain dehydrogenase with variable specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.550
AKO98216.1
Dehydrogenase with variable specificity; Related to short-chain alcohol dehydrogenases.
  
     0.525
AKO95581.1
ABC-type polysaccharide/polyol phosphate export system, permease component.
  
  
 0.508
AKO96461.1
Short-chain alcohol dehydrogenase of unknown specificity.
  
     0.502
Your Current Organism:
Marinovum algicola
NCBI taxonomy Id: 988812
Other names: M. algicola DG 898, Marinovum algicola DG 898, Marinovum algicola str. DG 898, Marinovum algicola strain DG 898
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.