STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKO96080.1Choline ABC transporter, periplasmic binding protein. (306 aa)    
Predicted Functional Partners:
AKO96082.1
Choline ABC transporter, permease protein.
 
 0.999
AKO96083.1
Choline ABC transporter, ATP-binding protein.
 
 0.999
betI
Transcriptional repressor BetI; Repressor involved in choline regulation of the bet genes.
 
     0.930
AKO97476.1
ABC transporter permease protein.
     
 0.873
AKO97379.1
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
     
 0.856
AKO98335.1
ABC-type (unclassified) transport system, ATPase component.
    
  0.852
AKO95684.1
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
   
 
 0.797
AKO96355.1
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
   
 
 0.797
AKO95349.1
ABC-type Mn2+/Zn2+ transport system, permease component.
    
  0.751
AKO95350.1
ABC-type Mn2+/Zn2+ transport system, permease component.
    
  0.751
Your Current Organism:
Marinovum algicola
NCBI taxonomy Id: 988812
Other names: M. algicola DG 898, Marinovum algicola DG 898, Marinovum algicola str. DG 898, Marinovum algicola strain DG 898
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.