STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKO96778.1Hypothetical protein. (176 aa)    
Predicted Functional Partners:
mfd
Transcription-repair coupling factor (mfd); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.778
AKO96701.1
Cell division protein.
  
     0.759
AKO97672.1
Hypothetical protein.
  
     0.758
AKO98063.1
Hypothetical protein.
  
     0.751
AKO95390.1
Hypothetical protein.
  
     0.749
AKO97353.1
Trypsin-like serine protease, typically periplasmic; Contains C-terminal PDZ domain.
  
     0.748
AKO97971.1
Hypothetical protein.
  
     0.748
AKO97387.1
Hypothetical protein.
  
     0.741
AKO97141.1
Hypothetical protein; DUF2927.
  
     0.735
AKO95458.1
Putative membrane protein.
  
     0.730
Your Current Organism:
Marinovum algicola
NCBI taxonomy Id: 988812
Other names: M. algicola DG 898, Marinovum algicola DG 898, Marinovum algicola str. DG 898, Marinovum algicola strain DG 898
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.