STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKO96862.1TRAP-type C4-dicarboxylate transport system, small permease component. (187 aa)    
Predicted Functional Partners:
AKO96861.1
TRAP transporter, DctM subunit.
 
  0.947
AKO96863.1
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family.
 
 
  0.921
AKO96860.1
Pyridoxal phosphate biosynthesis protein; Belongs to the PdxA family.
 
     0.851
AKO96864.1
Transcriptional regulator.
 
     0.649
AKO95225.1
TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.
  
     0.507
AKO95911.1
HupE / UreJ protein.
  
     0.474
AKO95227.1
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family.
 
 
  0.415
Your Current Organism:
Marinovum algicola
NCBI taxonomy Id: 988812
Other names: M. algicola DG 898, Marinovum algicola DG 898, Marinovum algicola str. DG 898, Marinovum algicola strain DG 898
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.