STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKO97389.1Polyhydroxyalkanoate depolymerase, intracellular. (421 aa)    
Predicted Functional Partners:
AKO97388.1
poly(R)-hydroxyalkanoic acid synthase, class I.
 
  
 0.996
AKO97387.1
Hypothetical protein.
 
   
 0.902
AKO97385.1
Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.856
AKO97083.1
Putative esterase of the alpha-beta hydrolase superfamily.
  
     0.522
clpX
Endopeptidase Clp ATP-binding protein regulatory subunit (clpX); ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.514
fur
Fe2+/Zn2+ uptake regulation protein; Belongs to the Fur family.
      
 0.479
fur-2
Fe2+/Zn2+ uptake regulation protein; Belongs to the Fur family.
      
 0.479
AKO97883.1
Hypothetical protein.
  
     0.473
AKO97791.1
Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
  
     0.460
AKO95391.1
Outer membrane protein; And related peptidoglycan-associated (lipo)proteins.
  
     0.428
Your Current Organism:
Marinovum algicola
NCBI taxonomy Id: 988812
Other names: M. algicola DG 898, Marinovum algicola DG 898, Marinovum algicola str. DG 898, Marinovum algicola strain DG 898
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.