STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKO98567.1Hemolysin-type calcium-binding protein repeat protein (2 copies). (329 aa)    
Predicted Functional Partners:
AKO97724.1
Hemolysin-type calcium-binding protein repeat protein (2 copies).
 
    
0.924
AKO97026.1
RTX toxin; And related Ca2+-binding proteins.
 
    
0.851
AKO98526.1
Hypothetical protein.
 
  0.818
AKO96991.1
Type I secretion membrane fusion protein, HlyD family.
 
  
 0.770
AKO98241.1
Type I secretion membrane fusion protein, HlyD family.
 
  
 0.719
AKO96992.1
Type I secretion system ABC transporter, PrtD family.
 
 
 0.718
AKO95294.1
Type I secretion membrane fusion protein, HlyD family.
 
    0.715
AKO98242.1
Type I secretion system ABC transporter, PrtD family.
 
 
 0.694
AKO95295.1
Type I secretion system ATPase.
 
 
 0.647
truB
tRNA pseudouridine 55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.536
Your Current Organism:
Marinovum algicola
NCBI taxonomy Id: 988812
Other names: M. algicola DG 898, Marinovum algicola DG 898, Marinovum algicola str. DG 898, Marinovum algicola strain DG 898
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.