STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atc_2371Rod shape-determining protein MreB. (347 aa)    
Predicted Functional Partners:
Atc_2372
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.993
Atc_2374
Penicillin-binding protein 2.
 
 
 
 0.949
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 
 0.935
Atc_1368
Conserved hypothetical protein.
  
 
 0.896
Atc_2373
Rod shape-determining protein MreD.
  
  
 0.850
Atc_0697
Penicillin-binding protein 2 (PBP-2).
 
 
 
 0.837
Atc_2689
Penicillin-binding protein 2.
 
 
 
 0.837
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.791
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
    0.706
Atc_2659
Cell division protein FtsW; Belongs to the SEDS family.
 
 
 0.666
Your Current Organism:
Acidithiobacillus caldus
NCBI taxonomy Id: 990288
Other names: A. caldus SM-1, Acidithiobacillus caldus SM-1, Acidithiobacillus caldus str. SM-1, Acidithiobacillus caldus strain SM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.