STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCON_0960Transcriptional regulator, PadR family protein. (165 aa)    
Predicted Functional Partners:
MCON_0958
Protein involved in multidrug efflux pump activity.
  
    0.670
MCON_0959
Methyltransferase, putative.
       0.625
fwdE
Tungsten formylmethanofuran dehydrogenase, subunit E.
 
    0.583
MCON_0956
Extracellular solute-binding protein, family 5.
     
 0.489
MCON_0961
Methyltransferase.
       0.479
MCON_0376
NADH oxidase; Protein involved in FAD binding and coenzyme binding.
  
    0.419
Your Current Organism:
Methanothrix soehngenii
NCBI taxonomy Id: 990316
Other names: M. soehngenii GP6, Methanosaeta concilii DSM 3671, Methanosaeta concilii GP6, Methanothrix soehngenii DSM 3671, Methanothrix soehngenii GP6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.