STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCON_1089Protein of unknown function (DUF1616). (355 aa)    
Predicted Functional Partners:
MCON_1087
Conserved hypothetical protein.
       0.694
MCON_1229
Membrane protein.
 
    0.587
MCON_1036
Uncharacterized protein family (UPF0153).
  
    0.532
MCON_2718
Conserved hypothetical protein.
  
     0.520
cdc6
Cell division control protein 6; Involved in regulation of DNA replication.
  
     0.516
MCON_2890
Conserved hypothetical protein.
  
     0.497
MCON_2928
CAAX amino terminal protease family protein.
 
    0.496
MCON_0338
PUA domain protein.
 
     0.492
atpE
V-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.485
rpoF
DNA-directed RNA polymerase subunit F.
  
     0.470
Your Current Organism:
Methanothrix soehngenii
NCBI taxonomy Id: 990316
Other names: M. soehngenii GP6, Methanosaeta concilii DSM 3671, Methanosaeta concilii GP6, Methanothrix soehngenii DSM 3671, Methanothrix soehngenii GP6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.