STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCON_1820Methyltransferase, putative. (213 aa)    
Predicted Functional Partners:
fpoD
F420H2 dehydrogenase, subunit D.
  
 0.971
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.644
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
 0.579
rpsX
Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.555
rpsC-2
Ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
  0.541
rpsD-2
Ribosomal protein S4E; Belongs to the eukaryotic ribosomal protein eS4 family.
   
  0.540
rpsF
Ribosomal protein S6e; Protein involved in ribosome; Belongs to the eukaryotic ribosomal protein eS6 family.
  
  0.538
MCON_1819
NAD-dependent nucleotide sugar epimerase; Protein involved in racemase and epimerase activity.
   
 
 0.535
rpsL
Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
  
  0.529
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.525
Your Current Organism:
Methanothrix soehngenii
NCBI taxonomy Id: 990316
Other names: M. soehngenii GP6, Methanosaeta concilii DSM 3671, Methanosaeta concilii GP6, Methanothrix soehngenii DSM 3671, Methanothrix soehngenii GP6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.