STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCON_1929Conserved hypothetical protein. (386 aa)    
Predicted Functional Partners:
MCON_1930
Putative methanogenesis marker 13 metalloprotein.
    
 0.985
nifH
Protein involved in nitrogen fixation, nitrogenase activity and iron-iron nitrogenase complex.
    
 0.925
MCON_1224
Capsular polysaccharide biosynthesis protein.
  
  
 0.806
MCON_1225
Glycosyltransferase family 28 C-terminal domain protein.
  
  
 0.806
cbiX
Sirohydrochlorin cobaltochelatase; Protein involved in cobalt ion binding.
     
 0.732
nifH2
Nitrogenase iron protein 2; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
    
 0.625
cobA
Uroporphyrinogen III synthase/methyltransferase; Protein involved in uroporphyrin-III C-methyltransferase activity and siroheme biosynthetic process.
  
  
 0.582
asnB
Protein involved in asparagine synthase (glutamine-hydrolyzing) activity and asparagine biosynthetic process.
  
  
 0.580
MCON_0072
Putative methanogenesis marker domain 9.
     
 0.553
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.499
Your Current Organism:
Methanothrix soehngenii
NCBI taxonomy Id: 990316
Other names: M. soehngenii GP6, Methanosaeta concilii DSM 3671, Methanosaeta concilii GP6, Methanothrix soehngenii DSM 3671, Methanothrix soehngenii GP6
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