STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCON_2052TPR-repeat protein. (349 aa)    
Predicted Functional Partners:
MCON_2475
Hypothetical protein.
 0.641
MCON_2053
Hypothetical protein.
      0.603
dnaK
Chaperone protein DnaK; Acts as a chaperone.
  
 0.584
MCON_1526
Glycosyl transferase, group 2 family protein.
  
 
 0.547
MCON_2055
DNA methylase.
       0.529
MCON_3220
Histidine-protein kinase.
   
 
 0.527
rpoD
DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.524
MCON_2054
Type III restriction enzyme, res subunit; Protein involved in Type III site-specific deoxyribonuclease activity.
       0.523
MCON_2050
Hypothetical protein.
       0.512
rpoH
DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.
  
 0.478
Your Current Organism:
Methanothrix soehngenii
NCBI taxonomy Id: 990316
Other names: M. soehngenii GP6, Methanosaeta concilii DSM 3671, Methanosaeta concilii GP6, Methanothrix soehngenii DSM 3671, Methanothrix soehngenii GP6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.