STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appFOligopeptide ABC transport, ATP-binding protein. (266 aa)    
Predicted Functional Partners:
MCON_2146
Oligopeptide ABC transporter, permease protein.
 
 0.981
MCON_3434
Oligopeptide/dipeptide ABC transporter, permease protein.
 
 0.981
MCON_2144
Oligopeptide ABC transporter, permease.
  
 0.959
oppD
Oligopeptide ABC transporter, ATP-binding protein; Protein involved in oligopeptide transport, protein transport and oligopeptide transporter activity.
 
  
0.959
MCON_3534
Conserved domain protein.
     0.914
MCON_3531
Conserved domain protein.
    
0.900
MCON_2040
Efflux ABC transporter, permease protein.
      0.874
MCON_3435
Oligopeptide/dipeptide ABC transporter, permease protein.
  
 0.867
MCON_0455
Conserved domain protein.
 
 
 0.770
MCON_2143
Oligopeptide ABC transporter, solute-binding protein.
 
 0.678
Your Current Organism:
Methanothrix soehngenii
NCBI taxonomy Id: 990316
Other names: M. soehngenii GP6, Methanosaeta concilii DSM 3671, Methanosaeta concilii GP6, Methanothrix soehngenii DSM 3671, Methanothrix soehngenii GP6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.