STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbCProtein involved in dTDP-4-dehydrorhamnose 3,5-epimerase activity. (165 aa)    
Predicted Functional Partners:
rfbD
Protein involved in dTDP-4-dehydrorhamnose reductase activity, O antigen biosynthetic process and dTDP-rhamnose biosynthetic process.
 
 
 0.994
rfbB
Protein involved in dTDP-glucose 4,6-dehydratase activity.
 
 
 0.994
MCON_2589
Lipopolysaccharide O-side chain biosynthesis protein.
 
  
 0.947
rfbA
Protein involved in glucose-1-phosphate thymidylyltransferase activity.
 
  
 0.947
MCON_1814
Methyltransferase/glycosyl transferase fusion protein.
 
  
 0.944
MCON_0485
dTDP-4-dehydrorhamnose 3,5-epimerase-related protein.
  
  
 
0.910
tuaD
Protein involved in UDP-glucose 6-dehydrogenase activity and cell wall organization and biogenesis.
  
  
 0.877
MCON_2588
Glycosyl transferase, family 2.
  
  
 0.830
MCON_1860
Glycosyl transferase group 2/group 1 fusion protein.
 
  
 0.788
MCON_1229
Membrane protein.
 
  
 0.771
Your Current Organism:
Methanothrix soehngenii
NCBI taxonomy Id: 990316
Other names: M. soehngenii GP6, Methanosaeta concilii DSM 3671, Methanosaeta concilii GP6, Methanothrix soehngenii DSM 3671, Methanothrix soehngenii GP6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.