STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCON_3101NADH dehydrogenase (ubiquinone), 24 kDa subunit; Protein involved in NADH dehydrogenase activity. (153 aa)    
Predicted Functional Partners:
fpoA
F420H2 dehydrogenase, subunit A; Protein involved in quinone binding and NADH dehydrogenase (quinone) activity.
  
 0.999
fpoB
F420H2 dehydrogenase, subunit B; Protein involved in NADH dehydrogenase complex (quinone); Belongs to the complex I 20 kDa subunit family.
 
 0.999
fpoD
F420H2 dehydrogenase, subunit D.
 
 0.999
fpoH
F420H2 dehydrogenase, subunit H; FPO shuttles electrons from F(420)H(2), via FAD and iron- sulfur (Fe-S) centers, to quinones in the F(420)H(2):heterodisulfide oxidoreduction chain. The immediate electron acceptor for the enzyme in this species is believed to be methanophenazine. Couples the redox reaction to proton translocation (for every two electrons transferred, 0.9 hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 0.999
MCON_3064
4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 0.999
fpoM
F420H2 dehydrogenase, subunit M.
  
 0.999
fpoN
F420H2 dehydrogenase, subunit N.
  
 0.999
nuoF
NADH:ubiquinone oxidoreductase, nadh-binding subunit.
 0.999
fpoL
F420H2 dehydrogenase, subunit L.
  
 
 0.993
fpoK
F420H2 dehydrogenase, subunit K; Protein involved in ATP synthesis coupled electron transport.
  
 
 0.992
Your Current Organism:
Methanothrix soehngenii
NCBI taxonomy Id: 990316
Other names: M. soehngenii GP6, Methanosaeta concilii DSM 3671, Methanosaeta concilii GP6, Methanothrix soehngenii DSM 3671, Methanothrix soehngenii GP6
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