STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM15819.14a-hydroxytetrahydrobiopterin dehydratase. (84 aa)    
Predicted Functional Partners:
SDL99696.1
Phenylalanine-4-hydroxylase.
  
 0.987
SDM15789.1
Predicted DNA-binding protein, MmcQ/YjbR family.
       0.779
SDM44674.1
Homogentisate 1,2-dioxygenase.
  
  
 0.585
SDM15848.1
Zinc carboxypeptidase.
       0.575
SDM15878.1
Membrane associated serine protease, rhomboid family.
       0.570
SDM15905.1
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
       0.570
SDM44653.1
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.552
SDM15761.1
Tripeptide aminopeptidase; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
       0.533
SDL66335.1
methylmalonyl-CoA/ethylmalonyl-CoA epimerase.
  
  
 0.468
SDM04116.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
 
   
 0.463
Your Current Organism:
Pedobacter ruber
NCBI taxonomy Id: 990371
Other names: DSM 24536, LMG 26240, LMG:26240, P. ruber, Pedobacter ruber Margesin and Zhang 2013, Pedobacter sp. W1, strain W1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.