STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM92918.1DNA-binding response regulator, LytR/AlgR family. (226 aa)    
Predicted Functional Partners:
SDM92857.1
Histidine kinase.
 
 0.976
SDM83106.1
Histidine kinase.
 
 0.894
SDL66651.1
Histidine kinase.
 
 0.883
SDM44801.1
Histidine kinase.
 
 0.883
SDM92887.1
Hypothetical protein.
       0.732
SDM92953.1
Hypothetical protein.
       0.714
SDM29458.1
Signal transduction histidine kinase.
 
  
 0.700
SDL85647.1
Response regulator receiver domain-containing protein.
    
 0.658
SDL66686.1
Two-component system, LytT family, response regulator.
  
  
 
0.573
SDL94298.1
Signal transduction histidine kinase.
    
 0.550
Your Current Organism:
Pedobacter ruber
NCBI taxonomy Id: 990371
Other names: DSM 24536, LMG 26240, LMG:26240, P. ruber, Pedobacter ruber Margesin and Zhang 2013, Pedobacter sp. W1, strain W1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.